Lookup Tables

The lookup tables or commonly referred to as controlled vocabulary tables are used in ImmPort as part of the data harmonization process. Many of the values in these tables are linked to Ontology defined terms. The following endpoints can be used to return the contents of these tables. Content is returned in JSON or TSV format. These endpoints do not require an ImmPort Access token.

BASE URL = https://www.immport.org/data/query//api/lookup/

OpenAPI - Swagger Documention

Table Description BASE URL + EndPoint Example
lk_adverse_event_severity List of adverse event severities lkAdverseEventSeverity lkAdverseEventSeverity?format=json
lkAdverseEventSeverity?format=tsv
lk_age_event List of age events lkAgeEvent lkAgeEvent?format=json
lkAgeEvent?format=tsv
lk_analyte List of analytes lkAnalyte lkAnalyte?format=json
lkAnalyte?format=tsv
lk_ancestral_population List of ancestral populations lkAncestralPopulation lkAncestralPopulation?format=json
lkAncestralPopulation?format=tsv
lk_cell_population List of cell populations lkCellPopulation lkCellPopulation?format=json
lkCellPopulation?format=tsv
lk_cell_population_marker List of cell population markers lkCellPopulationMarker lkCellPopulationMarker?format=json
lkCellPopulationMarker?format=tsv
lk_compound_role List of compound roles lkCompoundRole lkCompoundRole?format=json
lkCompoundRole?format=tsv
lk_criterion_category List of criterion categories lkCriterionCategory lkCriterionCategory?format=json
lkCriterionCategory?format=tsv
lk_data_completeness List of data completion levels lkDataCompleteness lkDataCompleteness?format=json
lkDataCompleteness?format=tsv
lk_disease List of diseases lkDisease lkDisease?format=json
lkDisease?format=tsv
lk_disease_stage List of disease stages lkDiseaseStage lkDiseaseStage?format=json
lkDiseaseStage?format=tsv
lk_ethnicity List of ethnicities lkEthnicity lkEthnicity?format=json
lkEthnicity?format=tsv
lk_exp_measurement_tech List of experiment assay types lkExpMeasurementTech lkExpMeasurementTech?format=json
lkExpMeasurementTech?format=tsv
lk_exposure_material List of exposure materials lkExposureMaterials lkExposureMaterial?format=json
lkExposureMaterial?format=tsv
lk_exposure_process List of exposure process lkExposureProcees lkExposureProcess?format=json
lkExposureProcess?format=tsv
lk_expsample_result_schema List of result types lkExpsampleResultSchema lkExpsampleResultSchema?format=json
lkExpsampleResultSchema?format=tsv
lk_file_detail List of file detail types lkFileDetail lkFileDetail?format=json
lkFileDetail?format=tsv
lk_gender List of genders lkGender lkGender?format=json
lkGender?format=tsv
lk_Hmdb List of metabolites (Mass Spectrometry) lkHmdb lkHmdb?format=json
lkHmdb?format=tsv
lk_lab_test_name List of lab test names lkLabTestName lkLabTestName?format=json
lkLabTestName?format=tsv
lk_lab_test_panel_name List of lab test panel names lkLabTestPanelName lkLabTestPanelName?format=json
lkLabTestPanelName?format=tsv
lk_locus_name List of locus names lkLocusName lkLocusName?format=json
lkLocusName?format=tsv
lk_mass_spectrometry_type List of mass spectrometry types lkMassSpectrometryType lkMassSpectrometryType?format=json
lkMassSpectrometryType?format=tsv
lk_organization List of organizations lkOrganization lkOrganization?format=json
lkOrganization?format=tsv
lk_personnel_role List of roles lkPersonnelRole lkPersonnelRole?format=json
lkPersonnelRole?format=tsv
lk_plate_type List of plate types lkPlateType lkPlateType?format=json
lkPlateType?format=tsv
lk_protein_name List of protein names lkProteinName lkProteinName?format=json
lkProteinName?format=tsv
lk_protocol_type List of protocol types lkProtocolType lkProtocolType?format=json
lkProtocolType?format=tsv
lk_public_repository List of public repositories lkPublicRepository lkPublicRepository?format=json
lkPublicRepository?format=tsv
lk_race List of races lkRace lkRace?format=json
lkRace?format=tsv
lk_reagent_type List of reagent type lkReagentType lkReagentType?format=json
lkReagentType?format=tsv
lk_research_focus List of categories for research focus lkResearchFocus lkResearchFocus?format=json
lkResearchFocus?format=tsv
lk_sample_type List of sample types lkSampleType lkSampleType?format=json
lkSampleType?format=tsv
lk_source_type List of source types lkSourceType lkSourceType?format=json
lkSourceType?format=tsv
lk_species List of species lkSpecies lkSpecies?format=json
lkSpecies?format=tsv
lk_study_file_type List of file types lkStudyFileType lkStudyFileType?format=json
lkStudyFileType?format=tsv
lk_study_panel List of study panels (UI) lkStudyPanel lkStudyPanel?format=json
lkStudyPanel?format=tsv
lk_subject_location List of geographic locations lkSubjectLocation lkSubjectLocation?format=json
lkSubjectLocation?format=tsv
lk_t0_event List of time zero events lkT0Event lkT0Event?format=json
lkT0Event?format=tsv
lk_time_unit List of time units lkTimeUnit lkTimeUnit?format=json
lkTimeUnit?format=json
lk_transcript_type List of transcript types lkTranscriptType lkTranscriptType?format=json
lkTranscriptType?format=tsv
lk_unit_of_measure List of unit of measure lkUnitOfMeasure lkUnitOfMeasure?format=json
lkUnitOfMeasure?format=tsv
lk_user_role_type List of roles for a user lkUserRoleType lkUserRoleType?format=json
lkUserRoleType?format=tsv
lk_virus_strain List of virus strains lkVirusStrain lkVirusStrain?format=json
lkVirusStrain?format=tsv
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