rna_seq_results
| Name | RNA_SEQ_Results.txt |
| JSON File Name | RNA_SEQ_Results.json |
| Type | multiple |
| Schema Version | 3.37 |
| Description | The RNA sequencing Transcripts results experiment sample template defines and annotates the assay results for a sample by linking sample, experiment, and results together. |
| Download | ⬇️ RNA_SEQ_Results.xlsx ⬇️ RNA_SEQ_Results.txt ⬇️ RNA_SEQ_Results.json This top-level schema references companion files (e.g. RNA_SEQ_Results.Datum.json) in the same json-templates folder — download the all_templates.zip to get them all together. |
Reading this table: see How to read the template documentation for what Required / Conditionally required / Optional mean and how to read the Type & Constraints column.
| Template Column | Requirement | Type & Constraints | Description |
|---|---|---|---|
| Expsample ID | Required | Text, max 15 characters Reference — must already exist (in this package or the workspace) as a expsampleJSON: expsampleId (string) | The experiment sample identifier must be stored in ImmPort or in the experimentsamples.txt template. Please enter either an experiment sample user defined ID or ImmPort accession. |
| Reference Transcript ID | Required | Text, max 100 characters JSON: referenceTranscriptId (string) | The NCBI ID for the transcript/gene. Either the NCBI ID or the Ensembl ID must be provided. The ID for the transcript/gene. Either the NCBI ID or the Ensembl ID must be provided. |
| Repository Name | Required | Text, max 50 characters Controlled vocabulary — value must be one of lk_public_repository JSON: repositoryName (enum) | The public repository name for the transcript (for example, Ensembl or NCBI Gene). |
| Transcript Type Reported | Required | Text, max 100 characters Preferred vocabulary — reported value is kept; a preferred term from lk_transcript_type is filled in when it matches JSON: transcriptTypeReported (enum) | The type of transcript reported. |
| Result Unit Reported | Required | Text, max 100 characters Preferred vocabulary — reported value is kept; a preferred term from lk_rna_sequence_result_unit_type is filled in when it matches JSON: resultUnitReported (enum) | The unit for the result_value. The unit for the result value. |
| Value Reported | Required | Text, max 50 characters JSON: valueReported (number) | The transcripts or gene count for the transcript. The count or gene count for the transcript. |
| Comments | Optional | Text, max 500 characters JSON: comments (string) | Comments captures additional descriptive information that is added to the result. |