treatments

Name treatments.txt
Type single
Schema Version 3.34
Description The treatment template defines and annotates the in vitro modifications (molecule added, temperature, duration) made to a sample. Treatments are required to be referenced by experiment samples and optionally by biologic samples.
Template ColumnRequiredDescription
User Defined ID True The treatment user defined ID is an identifier chosen by the data provider to refer to a treatment agent which can be a molecule, time or temperature. This ID may be referenced by other data records (e.g. study). The user defined ID is not shared.
Name True The treatment name is not referenced directly by other data records. The name should be an informative to a researcher reviewing the data. Treatments may be referenced by more than one biological or experiment sample. There are three categories to describe the molecular content, time and/or temperature applied in a sample treatment. You may enter data for amount, duration or temperature only any combination of these categories (e.g. amount and duration).
Use Treatment? True If 'No' is selected, you must enter a value in the Treatment User Defined ID and Name columns and that is all. If 'Yes' is selected, you must enter a value in the Treatment User Defined ID and Name columns and the value/unit pair of columns for amount or duration or temperature.
Amount Value False The value should be a number.
Amount Unit False The amount unit preferred terms list has commonly used units. If additional units are needed, please contact the ImmPort HelpDesk.
Duration Value False The Duration Value indicates how long a treatment agent was applied to a sample.
Duration Unit False The duration unit preferred terms list has commonly used units. If additional units are needed, please contact the ImmPort HelpDesk.
Temperature Value False The Temperature Value indicates how long a treatment agent was applied to a sample.
Temperature Unit False The temperature unit preferred terms list has commonly used units. If additional units are needed, please contact the ImmPort HelpDesk.
Comments False The Comments column allows the data provider to provide additional descriptive information.
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