labtests

Name labTests.txt
Type combined-result
Schema Version 3.34
Description The lab tests template defines and annotates the lab test panels, the lab tests and results. This template combines the functions of the legacy lab test panels and lab test results templates into a single template. The biological sample and the lab test panel can be either new or pre-defined in this template. Any combination is acceptable. The only restriction is that the biological sample is the key to template and must be unique within the template.
Template ColumnRequiredDescription
Study ID False A lab test panel may be linked to a single study.
Biosample ID True The biological sample user defined ID is an identifier chosen by the data provider to refer to a sample. This ID may be referenced by other data records (e.g. experiment sample). The user defined ID is not shared.
Subject ID False Please enter either a subject user defined ID or ImmPort accession for the subject from which the sample was derived. A single subject record is permitted.
Planned Visit ID False The link to a study's planned visit provides temporal context for a sample's derivation from a subject.
Type False The sample types are adopted from Uberon, Cell and CHEBI ontologies.
Subtype False Enter a sample type that is of finer resolution than the standard sample types provided. If the 'Biological Sample Type' is 'Other', then the sample subtype must be entered.
Name False The biological sample name is not referenced by other data records.
Description False The biological sample description is used to describe details of the sample not captured in other columns.
Study Time Collected False Study time collected describes the time value for when a sample was derived from a subject.
Study Time Collected Unit False The time units are standard terms recommended by the HIPC Standards group.
Study Time T0 Event False The time zero event refers to the study milestone upon which time is based.
Study Time T0 Event Specify False Enter a time zero event if 'Other' is selected in column 'Study Time T0 Event'.
Lab Test Panel ID True The lab test panel user defined ID is an identifier chosen by the data provider to refer to lab panel. This ID may be referenced by other data records (e.g. lab test). The user defined ID is not shared.
Protocol ID(s) False Please enter either a protocol user defined ID or ImmPort accession. One or more identifiers can be entered per subject. Separate identifiers by semicolon (;).
Name Reported False The lab panel name describe lab test panel. Please select a lab panel name from the list provided if the name matches your name or enter a name if there is not an appropriate one provided. This name is visible when the panel is shared.
Result Separator Column False This pseudo column separates meta data from results.
User Defined ID True The lab test user defined ID is an identifier chosen by the data provider to refer the lab test. The user defined ID is not shared.
Name Reported True The lab test name describes lab test. Please select a lab test name from the list provided if the name matches your name or enter a name if there is not an appropriate one provided. This name is visible when the panel is shared.
Result Value Reported True The lab test result captures the assayed value for a sample and can include letters, numbers and greater than or less than symbols.
Result Unit Reported True The lab test result unit describes the unit for the lab test value.
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