mass_spec_metabolomic_results
| Name | Mass_Spectrometry_Metabolomic_Results.txt |
| JSON File Name | Mass_Spectrometry_Metabolomic_Results.json |
| Type | multiple |
| Schema Version | 3.37 |
| Description | The Metabolite Mass Spectrometry experiment sample template defines and annotates the assay results for a sample by linking sample, experiment, and results together. More than one intensity results per assayed sample. |
| Download | ⬇️ Mass_Spectrometry_Metabolomic_Results.xlsx ⬇️ Mass_Spectrometry_Metabolomic_Results.txt ⬇️ Mass_Spectrometry_Metabolomic_Results.json This top-level schema references companion files (e.g. Mass_Spectrometry_Metabolomic_Results.Datum.json) in the same json-templates folder — download the all_templates.zip to get them all together. |
Reading this table: see How to read the template documentation for what Required / Conditionally required / Optional mean and how to read the Type & Constraints column.
| Template Column | Requirement | Type & Constraints | Description |
|---|---|---|---|
| Expsample ID | Required | Text, max 15 characters Reference — must already exist (in this package or the workspace) as a expsampleJSON: expsampleId (string) | The experiment sample identifier must be stored in ImmPort or in the experimentsamples.txt template. Please enter either an experiment sample user defined ID or ImmPort accession. |
| Intensity | Required | Number JSON: intensity (number) | The intensity of the mass spectrometry result. |
| Retention Time | Required | Number JSON: retentionTime (number) | The retention time of the mass spectrometry result. |
| Retention Time Unit | Required | Text, max 25 characters Controlled vocabulary — value must be one of lk_time_unit JSON: retentionTimeUnit (enum) | The unit of time for the the retention time of the mass spectrometry result. Please select a time unit name from the list provided. |
| M/Z Ratio | Required | Number JSON: mZRatio (number) | The ratio of mass to Z charge. |
| Z (Charge) | Required | Text, max 50 characters JSON: zCharge (string) | The Z charge of the mass spectrometry result. |
| Database ID Reported | Optional | Text, max 50 characters Preferred vocabulary — reported value is kept; a preferred term from lk_hmdb is filled in when it matches JSON: databaseIdReported (enum) | The Optional HMDB, PubChem, or RefMet ID associated with the result. Pick a value from the list if it fits the result. The Optional Database ID (Human Metabalone Database (HMDB), PubChem, or RefMet ID) associated with the result. Pick a value from the list if it fits the result. |
| Metabolite Name | Optional | Text, max 255 characters JSON: metaboliteName (string) | The Optional name of the reported metabolite used in the mass spectrometry. |
| Comments | Optional | Text, max 500 characters JSON: comments (string) | Comments captures additional descriptive information that is added to the result. |