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DR57 DataRelease

Release Date: September 2025
New Studies: 21
Updated Studies: 1

New Studies

SDY3080: The impact of in utero HIV exposure on infant T and B cell responses in Malawi
Status: New
Description: More than 1.5 million infants each year are born with in utero exposure to HIV infection. While prevention of mother to child transmission successfully prevents congenital infection, HIV exposed but uninfected infants (HEU) are more susceptible to common enteric and respiratory infections than their unexposed counterparts, and have higher mortality rate. The precise immunologic alterations that are responsible for this phenomenon among HEU infants have never been clearly characterized. Studies conducted after widespread availability of antiretroviral therapy (ART) have shown less pronounced differences in morbidity and mortality between HIV exposed and unexposed infants. We believe that the immune perturbations associated with in utero HIV exposure are mitigated by effective ART and the longer the control of the HIV infection is during gestation, the less immune alterations and clinical risk of disease the infant will experience. In this study, we will test the hypothesis that infants born to mothers with suppressed HIV infection since conception will have adaptive immune responses similar to HIV-unexposed infants while infants exposed to high level of HIV infection through most of pregnancy will have a dysregulated adaptive immune response. We propose a longitudinal analysis of adaptive immune subsets in HEU infants, comparing three well-characterized mother-infant cohorts from a single health center in Malawi, where, as in much of sub-Saharan Africa, women often receive their first HIV diagnosis when they present for antenatal care late in pregnancy. In this setting, we will enroll (1) infants born to women diagnosed with HIV infection at the first antenatal visit after 26 weeks gestation, thus exposed to uncontrolled viremia for over half of the pregnancy, (2) infants born to women on ART with undetectable viral loads before conception, and (3) HIV unexposed infants born to HIV uninfected mothers. All HIV-infected women will receive the same ART regimen and will breastfeed their infants during the 9-month follow up period. We will assess the adaptive immune response by probing the immune system at birth, 4 and 9 months of age with both polyclonal stimuli and routine immunization antigens, to which all infants will be exposed in the first three months of life. We will compare differentiation, activation levels and antigen specific T and B cell responses for the three groups of infants, applying state-of-the-art technology for detailed and comprehensive analyses. This will be the most comprehensive longitudinal assessment of the impact of HIV exposure on the development of the adaptive immune responses in infants. The results will provide important evidence for public health policy in helping to determine the optimal timing of ART treatment to maximize infant health and survival.
Program/Contract:
ProgramContract
Immunity in Neonates and Infants (U01) RFA-AI-16-001 Effects Of Neonatal Microbial Exposure On Anti-Polysaccharide B Cell Development (RFA-AI-16-001)
DOI: None
Subjects: 67
Study PI, contact:
NameOrganizationSite
David Rach University of Maryland, Baltimore University of Maryland, Baltimore
Cristiana Cairo University of Maryland, Baltimore University of Maryland, School of Medicine
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Spectral Flow Cytometry 973
Clinical Assessments:None

SDY3086: LEAP Trio ITN070AD: Follow up of LEAP Participants and Their Families
Status: New
Description: This long-term follow-up study assessed the durability of peanut allergy prevention among children previously enrolled in the LEAP ITN032AD and LEAP-On ITN049AD trials. The LEAP trial established that early peanut introduction significantly reduced the incidence of peanut allergy at age five. LEAP-On confirmed the persistence of tolerance after a 12-month avoidance period. LEAP Trio was designed to determine whether this protective effect extends into adolescence under conditions of ad libitum peanut consumption. Participants underwent a single evaluation visit at approximately 144 months of age (12 years), during which comprehensive clinical and mechanistic assessments were conducted, including oral food challenges, skin prick testing, serologic assays (IgE and IgG4 to peanut allergens), dietary recall, and analysis of peanut protein exposure in household dust. The study population comprised original LEAP participants along with their siblings and parents, enabling the characterization of genetic and immunologic correlates of peanut allergy outcomes. Peripheral blood and other biospecimens were collected to support mechanistic analyses of immune function.
Program/Contract:
ProgramContract
ITN: Collaborative Network for Clinical Research on Immune Tolerance Network Immune Tolerance Network
DOI: None
Subjects: 1868
Study PI, contact:
NameOrganizationSite
Gideon Lack Guy's and St. Thomas' NHS Foundation Trust/ King's College London Children's Allergy Unit, Evelina London Children's Hospital
Lisa Wheatley National Institute of Allergy and infectious Disease (NIAID), NIH NIAID, Bethesda, MD
Michelle Huffaker Immune Tolerance Network (ITN), University of California, San Francisco (UCSF) UCSF Diabetes Center, 513 Parnassus Avenue, San Francisco, CA
Publications:
Follow-up to Adolescence after Early Peanut Introduction for Allergy Prevention.. NEJM evidence Jun 2024. doi: 10.1056/EVIDoa2300311 [Pubmed: 38804779]
Resources:
SDY660 - LEAP Study https://www.immport.org/shared/search?text=sdy660]
Assays:None
Clinical Assessments:
Cardiovascular
Dermatological
Does the participant meet the protocol defined criteria for Asthma?
Ears / Nose / Throat
Endocrine / Metabolic
Gastrointestinal / Abdomen
General Appearance
Genito-urinary
Has the participant had symptoms of rhinoconjunctivitis
Hematologic / Lymphatic
Hepatic
Immunological
Musculoskeletal
Neurological
Ophthalmological
Other
Psychological / Psychiatric
Respiratory

SDY3089: RESTARRT ITN039ST: ATG, Rituximab, Tacrolimus, MMF, Sirolimus and IS Withdrawal in Renal Transplantation
Status: New
Description: Kidney transplantation is the preferred treatment for end-stage renal disease, but long-term success is limited by the need for continuous immunosuppressive therapy to prevent rejection. While effective, these medications carry significant long-term risks, including infection, cardiovascular complications, malignancy, and drug-related toxicity. The RESTARRT study, Research Study of ATG and Rituximab in Renal Transplantation, was designed to evaluate whether a specific regimen using antithymocyte globulin ATG and rituximab could enable the safe withdrawal of immunosuppressive drugs in adult recipients of well-matched, living-donor kidney transplants. All participants received a standardized induction protocol consisting of four doses of ATG and two doses of rituximab. Maintenance immunosuppression included tacrolimus and sirolimus, with optional early use of mycophenolate mofetil MMF. Beginning at 26 weeks post-transplant, eligible participants, those with stable renal function, absence of donor-specific antibodies, and no history of rejection, entered a staged withdrawal process. Tacrolimus was tapered between weeks 26 and 38, and sirolimus between weeks 56 and 88, with no reattempt allowed after failure. Participants intolerant to tacrolimus or sirolimus could be transitioned to an MMF-based regimen and undergo sequential withdrawal. The study included scheduled surveillance biopsies, renal function monitoring, and serial assessment for donor-specific HLA antibodies DSA. Immune monitoring included blood and tissue-based analyses such as flow cytometry of peripheral blood mononuclear cells PBMCs, HLA antibody testing, gene expression profiling, and cytokine assays. Participants were followed intensively during withdrawal and through a two-year post-withdrawal period, with additional visits extending up to four years from transplant. This study tested whether depleting both T cells and B cells through a dual induction strategy could reshape the immune response after transplantation and create conditions favorable for long-term graft acceptance without continuous immunosuppressive therapy.
Program/Contract:
ProgramContract
ITN: Collaborative Network for Clinical Research on Immune Tolerance Network Immune Tolerance Network
DOI: None
Subjects: 14
Study PI, contact:
NameOrganizationSite
James Markmann Massachusetts General Hospital Massachusetts General Hospital Department of Surgery
Nancy Bridges National Institute of Allergy and Infectious Diseases (NIAID) National Institutes of Health (NIH)
Publications:
Immunosuppression withdrawal in living-donor renal transplant recipients following induction with antithymocyte globulin and rituximab: Results of a prospective clinical trial.. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons Jul 2024. doi: 10.1016/j.ajt.2024.03.007 [Pubmed: 38467375]
Resources:
Assays:None
Clinical Assessments:None

SDY3091: EAT ITN900AD: Enquiring About Tolerance
Status: New
Description: This randomized controlled trial, referred to as the Enquiring About Tolerance (EAT) study, was conducted at a single site to investigate whether the early introduction of allergenic foods can induce oral tolerance and reduce the development of food allergies in infants. The study enrolled healthy, exclusively breastfed infants from the general population in the UK. Participants were randomized at 3 months of age to one of two arms: (1) the intervention arm, in which infants continued breastfeeding while introducing six allergenic foods (cow's milk in the form of yogurt, boiled egg, peanut, sesame, whitefish such as cod, and wheat introduced after four months) under dietetic supervision, and (2) the control arm, in which infants followed standard UK Government weaning advice recommending exclusive breastfeeding until around 6 months of age with delayed introduction of allergenic foods. Infants in the intervention arm were required to consume each allergenic food at least twice weekly to achieve a minimum ingestion of 4 grams of protein per week per food by five months of age. All infants were followed until three years of age to assess the period and cumulative prevalence of IgE-mediated food allergy, sensitization, eczema, allergic rhinitis, atopic wheeze, combined allergic disease, and nutritional safety.
Program/Contract:
ProgramContract
ITN: Collaborative Network for Clinical Research on Immune Tolerance Network Early introduction of allergenic foods to induce tolerance in infants
DOI: None
Subjects: 1303
Study PI, contact:
NameOrganizationSite
Gideon Lack Guy’s and St Thomas’ NHS Foundation Trust Children’s Allergies Department, St Thomas' Hospital
Michael Perkin Guy’s and St Thomas’ NHS Foundation Trust Children’s Allergies Department, St Thomas' Hospital
Publications:
Randomized Trial of Introduction of Allergenic Foods in Breast-Fed Infants.. The New England journal of medicine May 2016. doi: 10.1056/NEJMoa1514210 [Pubmed: 26943128]
Resources:
Assays:None
Clinical Assessments:None

SDY3126: Plasmodium yoelii MSP1/8 mRNA vaccine
Status: New
Description: To evaluate the mRNA vaccine platform for blood-stage Plasmodium parasites, we completed a proof-of-concept study using the P. yoelii mouse model of malaria and two mRNA-based vaccines. Both encoded PyMSP1-19 fused to PyMSP8 (PyMSP1/8). One was designed for secretion of the encoded protein (PyMSP1/8-sec); the other encoded membrane-bound antigen (PyMSP1/8-mem). Secretion of PyMSP1/8-sec and membrane localization of PyMSP1/8-mem were verified in mRNA-transfected cells. As recombinant PyMSP1/8 (rPyMSP1/8) is known to protect mice against lethal P. yoelii 17XL infection, we first compared immunogenicity and efficacy of the PyMSP1/8-sec mRNA vaccine versus the recombinant formulation in outbred CD1 mice. Animals were immunized three times followed by challenge with a lethal dose of P. yoelii 17XL parasitized RBCs (pRBCs). Similar immunization and challenge experiments were conducted to compare PyMSP1/8-sec versus PyMSP1/8-mem mRNA vaccines. Immunogenicity of the PyMSP1/8-sec mRNA vaccine was superior to the recombinant formulation, inducing higher antibody titers against both vaccine components. Following challenge with P. yoelii 17XL pRBCs, all PyMSP1/8-sec immunized animals survived, with 50% of these showing no detectible pRBCs in circulation. In addition, mean peak parasitemia in PyMSP1/8-sec mRNA immunized mice was significantly lower than that in the rPyMSP1/8 vaccine group. In a side-by-side comparison, both PyMSP1/8-sec and PyMSP1/8-mem were protective against P. yoelii 17XL challenge, with PyMSP1/8-mem immunization providing a significantly higher level of sterile protection and lower mean peak parasitemia than PyMSP1/8-sec immunized mice. Conclusions: mRNA vaccines were highly immunogenic and potently protective against blood-stage malaria, outperforming a similar recombinant-based vaccine. Membrane-bound antigen was more effective at inducing protective antibody responses, highlighting the need to consider antigen localization for mRNA vaccine design.
Program/Contract:
ProgramContract
NIH Program Multivalent mRNA-based malaria vaccines
DOI: 10.3390/vaccines13070702
Subjects: 90
Study PI, contact:
NameOrganizationSite
James Burns Drexel University College of Medicine Department of Microbiology and Immunology
Amy Ott Drexel University College of Medicine Department of Microbiology and Immunology
Patrick Loll Drexel University College of Medicine Department of Biochemistry and Molecular Biology
Publications:None
Resources:
study_link https://pubmed.ncbi.nlm.nih.gov/40733679/]
Assays:
Assay TypeNumber of Exp. Samples
ELISA 540
Other 0
Clinical Assessments:
Survival

SDY3186: Longitudinal analysis of NA and HA antibodies after seasonal IIV
Status: New
Description: The study assessed NI and HI antibody production, persistence, and interrelation following immunization with three different seasonal trivalent inactivated influenza vaccines in healthy adults over >18 years, sampling up to 12 months.
Program/Contract:
ProgramContract
Other Programs Assessment of population immunity and epidemiological efficacy of flu vaccines in the Russian Federation
DOI: None
Subjects: 73
Study PI, contact:
NameOrganizationSite
Mariia Sergeeva Smorodintsev Research Institute of Influenza, Ministry of Health of the Russian Federation Saint Petersburg, Russia
Yulia Desheeva Institute of Experimental Medicine Saint Petersburg, Russia
Tal Einav La Jolla Institute for Immunology San Diego, USA
Publications:
Longitudinal Analysis of Neuraminidase and Hemagglutinin Antibodies to Influenza A Viruses after Immunization with Seasonal Inactivated Influenza Vaccines. Vaccines Nov 2023. doi: 10.3390/vaccines11111731 [Pubmed: 38006063]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 872
Clinical Assessments:None

SDY3192: Seasonal influenza vaccination and A/H3N2-specific antibody breadth
Status: New
Description: Adults and children were assessed for hemagglutinin-specific antibody responses using 14 antigenically distinct A/H3N2 viruses (1968–2018). The study compared responses after live-attenuated influenza vaccine (LAIV) in children, inactivated influenza vaccine (IIV) in adults, and natural infection in unvaccinated adults. Antibody landscapes and seroprotection breadth were evaluated over time.
Program/Contract:
ProgramContract
Other Programs Standardisation and development of assays for the Clinical evaluation of FLU and CO-associated Pneumonia vaccines
DOI: None
Subjects: 84
Study PI, contact:
NameOrganizationSite
Nina Urke Ertesvåg University of Bergen Bergen, Norway
Mai-Chi Trieu University of Bergen Bergen, Norway
Rebecca J. Cox University of Bergen / Haukeland Hospital Bergen, Norway
Kristin G-I Mohn Haukeland University Hospital Bergen, Norway
Karl Albert Brokstad University of Bergen Bergen, Norway
Sarah Larteley Lartey University of Bergen Bergen, Norway
Tal Einav La Jolla Institute for Immunology San Diego, USA
Publications:
Seasonal influenza vaccination expands hemagglutinin-specific antibody breadth to older and future A/H3N2 viruses. npj Vaccines May 2022. doi: 10.1038/s41541-022-00490-0 [Pubmed: 35750781]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 5530
Clinical Assessments:None

SDY3193: Opposing Effects of Prior Infection versus Prior Vaccination on Vaccine Immunogenicity against Influenza A(H3N2)
Status: New
Description: Adults (age 20-81) from Vietnam with known recent A(H3N2) infection history, with HI titers to 41 H3N2 strains measured pre-vaccination and 4, 7, 14, 21, and 280 days post-vaccination. Adults (age 24-66) from Australia with known recent influenza vaccination history, with HI titers to 36 H3N2 strains measured pre-vaccination as well as 21 and 224 days post-vaccination.
Program/Contract:
ProgramContract
Other Programs Melbourne Health Grant in Aid
DOI: None
Subjects: 149
Study PI, contact:
NameOrganizationSite
Annette Fox Peter Doherty Institute for Infection and Immunity WHO Collaborating Centre for Reference and Research on Influenza
Tal Einav La Jolla Institute for Immunology San Diego, USA
Publications:
Opposing Effects of Prior Infection versus Prior Vaccination on Vaccine Immunogenicity against Influenza A(H3N2) Viruses. Viruses Feb 2022. doi: 10.3390/v14030470 [Pubmed: 35336877]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 17592
Clinical Assessments:None

SDY3199: Fluorescence Activated Cell Sorting (FACS) Analysis of Mature RPE Cells
Status: New
Description: Flow cytometry analysis of mature RPE cells was performed as described in Sharma et al. (2022). Mature RPE cells were harvested at Day 75, and cell pellets were washed with FACS wash buffer (2% FBS in DPBS without Ca2+ or Mg2+) and fixed in 1 mL of 4% PFA (in DPBS) for 15 minutes at room temperature (RT). After incubation, 5 mL of FACS wash buffer was added, and cells were spun down at 400 g for 4 minutes. Cells were resuspended in wash buffer and added to a 96-well plate (about 300,000 cells per well). The plate was spun down at 400 g for 5 minutes, and the supernatant was carefully removed from the plate without disturbing the cell pellet. Cells were incubated with primary antibody diluted in 50 ul of permeabilization buffer (2% FBS & 0.02% Triton-X-100 in DPBS) overnight at 4 degrees C on a rocking shaker. The following primary antibodies were used to assess the purity of mature RPE cells: RPE progenitor marker-PMEL17 (1:6000; BioLegend #911506) and TYRP1 (1:50; Novus #NBP2-32907); RPE mature markers-CRALBP (1:500; ThermoFisher #MA1-813) and BEST1 (1:750; Santa Cruz Biotechnology #sc-32792). Cells without antibody (unstained cells) or isotype control antibody, purified mouse IgG1 (1:25; BioLegend #401402), were used as a control. Following overnight incubation with primary antibody, each well was washed with 100 ul of wash buffer at 400 g for 5 minutes. The supernatant was carefully removed, and 150 ul of resuspension buffer (0.2 mM EDTA in PBS without Ca2+ or Mg2+) was added to a well incubated with anti-PMEL17 or anti-BEST1 antibody. A well incubated with anti-TYRP1 or anti-CRALBP antibody was further incubated with a secondary antibody, Alexa Fluor 488 (1:1000, Invitrogen #A-21202) for 30 minutes at RT in 50 ul of permeabilization buffer. These wells were washed with 100 ul of wash buffer at 400 g for 5 minutes, and 150 ul of resuspension buffer was added. The flow cytometry was performed on a CytoFLEX S cytometer (Beckman Coulter Inc., Flow Cytometry Core Laboratory at Children’s Hospital of Philadelphia), and data were analyzed using CytExpert 2.6 (Beckman Coulter, Inc.).
Program/Contract:
ProgramContract
NIH Program Functional Analysis of Complement Variants in a Genotyped iPSC Epithelial Cell Model System
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Nicholas Dana University of Pennsylvania University of Pennsylvania
Publications:None
Resources:
Assays:None
Clinical Assessments:None

SDY3201: Fluorescence Activated Cell Soring (FACS) Analysis of Induced Pluripotent Stem Cells (iPSCs)
Status: New
Description: Flow cytometry analysis was performed as described in Sharma et al. (2022). Induced pluripotent stem cells (iPSCs) were harvested, and cell pellets were washed with FACS wash buffer (2% FBS in DPBS without Ca2+/Mg2+). Cells were then fixed in 1 mL of 4% PFA (in DPBS) for 15 minutes at room temperature (RT). After incubation, 5 mL of FACS wash buffer was added, and cells were centrifuged at 400 g for 4 minutes. Cells were resuspended in wash buffer and added to a 96-well plate (500,000 cells/well). The plate was centrifuged at 400 g for 5 minutes, and the supernatant was carefully removed from the plate without disturbing the cell pellet. Cells were incubated with stem cell markers, OCT4 (1:500; BioLegend #653704) and TRA-181 (1:50; BD BioScience #561024), diluted in 50 ul of permeabilization buffer (2% FBS & 0.02% Triton-X-100 in DPBS) overnight at 4 degrees C on a rocking shaker. Following overnight incubation with the antibody, each well was washed with 100 ul of wash buffer at 400 g for 5 minutes. The supernatant was carefully removed, and 150 ul of resuspension buffer (0.2 mM EDTA in PBS without Ca2+/Mg2+) was added. The flow cytometry was performed on a CytoFLEX S cytometer (Beckman Coulter Inc., Flow Cytometry Core Laboratory at Children’s Hospital of Philadelphia), and data were analyzed using CytExpert 2.6 (Beckman Coulter, Inc.).
Program/Contract:
ProgramContract
NIH Program Functional Analysis of Complement Variants in a Genotyped iPSC Epithelial Cell Model System
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Nicholas Dana University of Pennsylvania University of Pennsylvania
Publications:None
Resources:
Assays:None
Clinical Assessments:None

SDY3216: Brentuximab Vedotin for Systemic Sclerosis (BRAVOS)
Status: New
Description: This phase 1/2 multicenter, randomized, double-blind, placebo-controlled, dose-escalation safety study evaluates brentuximab vedotin in adults with diffuse cutaneous systemic sclerosis (dcSSc). Participants remain on stable background immunosuppressive therapy and are recruited through collaborating U.S. clinical sites. Enrollment includes adult males and females who meet protocol-defined eligibility criteria, without restriction by race or ethnicity. Eligible participants are randomized in a 6:2 ratio to brentuximab vedotin or placebo. The study design includes three sequential dose cohorts of eight participants each, resulting in a total of 24 individuals who receive sufficient dosing to enable safety evaluation. Study medication consists of intravenous brentuximab vedotin or matching placebo administered every three weeks across a 21-week treatment phase, for up to eight total doses. Cohort dose levels are 0.6 mg/kg, 1.2 mg/kg, and 1.8 mg/kg. Escalation between cohorts is determined following safety review by an independent committee. After treatment completion, participants undergo structured follow-up assessments at weeks 24, 28, 36, and 48 to monitor safety and clinical outcomes.
Program/Contract:
ProgramContract
ITN: Collaborative Network for Clinical Research on Immune Tolerance Network Immune Tolerance Network
DOI: None
Subjects: 17
Study PI, contact:
NameOrganizationSite
David Fox University of Michigan University of Michigan Health System – Division of Rheumatology
Dinesh Khanna University of Michigan University of Michigan Health System – Division of Rheumatology
Ellen Goldmuntz National Institute of Allergy and Infectious Diseases (NIAID), NIH DAIT – Division of Allergy, Immunology & Transplantation
Dawn Smilek Immune Tolerance Network (ITN) Immune Tolerance Network
Publications:None
Resources:
ClinicalTrials.gov identifier: NCT03222492 https://clinicaltrials.gov/study/NCT03222492]
Assays:None
Clinical Assessments:
Abdomen Level of Skin Thickness
Ability to brush teeth or comb hair independently
Ability to dress independently
Ability to eat independently without difficulty
Ability to eat with much difficulty or unable to do
Ability to eat with some difficulty
Ability to feed oneself independently
Ability to get out of bed or chair independently
Ability to grip and hold small objects
Ability to grip and open a jar
Ability to grip and turn a doorknob
Ability to maintain personal hygiene independently
Ability to perform daily chores
Ability to perform heavy household activities
Ability to perform light household activities
Ability to perform moderate household activities
Ability to reach down to pick up objects
Ability to reach overhead
Ability to rise from a seated position with assistance
Ability to rise from a seated position without assistance
Ability to walk across a room
Ability to walk with assistance or device
Ability to walk without assistance
Ability to wash face and hands independently
Able To Do Chores
Able To Go For a Walk
Able To Go Up and Down Stairs
Able To Run Errands
Ankle Left Muscle Strength
Ankle Right Muscle Strength
Ankle Sensory Neuropathy Grade
Anterior Chest Level of Skin Thickness
Atrial Fibrillation
Atrial Flutter
Autonomic Symptoms Bladder dysfunction
Autonomic Symptoms Constipation
Autonomic Symptoms Gastroparesis
Autonomic Symptoms Impotence
Autonomic Symptoms Nocturnal diarrhea
Autonomic Symptoms Orthostatic dizziness
AV Block
Axis Deviation
Balance and foot control: unsteady walking, tiptoe/heel standing, car pedal use
Bradycardia
Breathing difficulty VAS score
Cardiovascular
Dermatological / Skin
Description of other assistive device used
Diastolic Bolod Pressure
Difficulty Falling Asleep
Difficulty grasping objects with dominant hand
Difficulty grasping objects with non-dominant hand
Diffusing capacity for carbon monoxide (unadjusted)
Dorsum of Foot Level of Skin Thickness
Dorsum of Hand Level of Skin Thickness
E/A Ratio Reversed
Elbow Biceps Left Strength
Elbow Biceps Motor Neuropathy
Elbow Biceps Right Strength
Elbow Biceps Sensory Neuropathy
Elbow Triceps Left Strength
Elbow Triceps Motor Neuropathy
Elbow Triceps Right Strength
Elbow Triceps Sensory Neuropathy
Estimated Right Ventricular Systolic Pressure
Face Level of Skin Thickness
Fatigued on Average
Feel Fatigued
Felt Depressed
Felt Fearful
Felt Helpless
Felt Hopeless
Felt Uneasy
Felt Worthless
Fingers Level of Skin Thickness
Forced Expiratory Volume in One second
Forced Vital Capacity
Forearm Level of Skin Thickness
Gastrointestinal / Abdomen
General Appearance
Hand dexterity issues: buttoning, writing, tying laces, opening jars, using keys
Hard To Focus
Have Trouble Starting Things
Head / Ears / Nose / Throat
Heart Rate
Hip Gluteus Maximus Motor Neuropathy
Hip Gluteus Maximus Right Strength
Hip Gluteus Maximus Sensory Neuropathy
Hip Gluteus Medius Left Strength
Hip Gluteus Medius Right Strength
Hip Gluteus Medius Sensory Neuropathy
Hip Iliopsoas Motor Neuropathy
Hip Iliopsoas Right Strength
Hip Iliopsoas Sensory Neuropathy
Hypertrophy
Infusion Diastolic BP +1 Hour Post
Infusion Diastolic BP +15 Minutes
Infusion Diastolic BP +30 Minutes
Infusion Diastolic BP End of Infusion
Infusion Diastolic BP Pre-Infusion
Infusion Heart Rate +1 Hour Post
Infusion Heart Rate +15 Minutes
Infusion Heart Rate +30 Minutes
Infusion Heart Rate End of Infusion
Infusion Heart Rate Pre-Infusion
Infusion Respiratory Rate +1 Hour Post
Infusion Respiratory Rate +15 Minutes
Infusion Respiratory Rate +30 Minutes
Infusion Respiratory Rate End of Infusion
Infusion Respiratory Rate Pre-Infusion
Infusion Systolic BP +1 Hour Post
Infusion Systolic BP +15 Minutes
Infusion Systolic BP +30 Minutes
Infusion Systolic BP End of Infusion
Infusion Systolic BP Pre-Infusion
Infusion Temperature +1 Hour Post
Infusion Temperature +15 Minutes
Infusion Temperature +30 Minutes
Infusion Temperature End of Infusion
Infusion Temperature Pre-Infusion
Interference with daily activities VAS score
Interstitial Lung Disease Event
Knee Hamstring Left Strength
Knee Hamstring Motor Neuropathy
Knee Hamstring Right Strength
Knee Hamstring Sensory Neuropathy
Knee Quadriceps Left Strength
Knee Quadriceps Sensory Neuropathy
Left Ventricle Ejection Fraction
Left Ventricular Failure Event
Lower Leg Level of Skin Thickness
Lower limb mobility: climbing steps, rising from chair
Musculoskeletal
Myocardial Infarction/Ischemic Changes
Neck Axial Muscle Strength
Neck Motor Neuropathy Grade
Neck Sensory Neuropathy Grade
Neurological (excluding peripheral neuropathy)
New Pulmonary Arterial Hypertension Event
Overall assessment VAS score
Overall grip and opening ability
Overall health assessment
Overall hygiene ability
Overall reaching ability
Pain Interfere With Day to Day Activities
Pain Interfere With Household Chores
Pain Interfere With Social Activities
Pain Interfere With Work Around Home
Pain on average
Pain visual analog scale score
Percent Predicted Diffusing capacity for carbon monoxide
Percent Predicted Diffusing capacity for carbon monoxide Adjusted for Hemoglobin
Percent Predicted Forced Expiratory Volume in One second
Percent Predicted Forced Vital Capacity
Pericardial Effusion Present
Pericardial Effusion Size
Physician's Global Assessment
Pin Sensibility Left Lower Limb
Pin Sensibility Left Upper Limb
Pin Sensibility Right Lower Limb
Pin Sensibility Right Upper Limb
Predicted Diffusing capacity for carbon monoxide
Predicted Diffusing capacity for carbon monoxide Adjusted for Hemoglobin
Premature Atrial Contractions (PACs)
Premature Ventricular Contractions
Problem With Sleep
Prolonged QT
Raynaud�s phenomenon VAS score
Renal Crisis Status
Respiratory / Chest
Right Atrial Diameter
Right Atrium Anatomy
Right Ventricle Anatomy
Right Ventricle Diameter
Run-down on Average
Sensory Symptoms Left Lower Limb
Sensory Symptoms Left Upper Limb
Sensory Symptoms Right Lower Limb
Sensory Symptoms Right Upper Limb
Septal Wall Shape
Shoulder Left Muscle Strength
Shoulder Motor Neuropathy Grade
Shoulder Right Muscle Strength
Shoulder Sensory Neuropathy Grade
Sleep Quality
Sleep Was Refreshing
Spirometry Age Factor
ST-T Wave Changes
Systolic Bolod Pressure
Tachycardia
Temperature
Thigh Level of Skin Thickness
tricuspid regurgitation (TR) jet present
Tricuspid Regurgitation (TR) Jet Velocity
Trouble Doing All Activities
Trouble Doing Family Activities
Trouble Doing Leisure Activities
Trouble Doing Usual Work
Ulceration VAS score
Upper Arm Level of Skin Thickness
Upper limb reach/grooming: combing hair, reaching shelf
Use of adaptive utensils for eating
Use of any assistive mobility device
Use of bath seat for bathing
Use of cane for mobility
Use of crutches for mobility
Use of grab bar in bath or shower
Use of jar opener
Use of long-handled appliance for grooming
Use of long-handled reacher
Use of other assistive device (specify)
Use of other hygiene-related assistive device (specify)
Use of raised toilet seat
Use of special chair for support
Use of walker for mobility
Use of wheelchair for mobility
Vibration Sensibility Left Lower Limb
Vibration Sensibility Left Upper Limb
Vibration Sensibility Right Lower Limb
Vibration Sensibility Right Upper Limb
Worries Overwhelmed Me
Wrist Extensor Left Strength
Wrist Extensor Motor Neuropathy
Wrist Extensor Right Strength
Wrist Extensor Sensory Neuropathy
Wrist Flexor Left Strength
Wrist Flexor Right Strength
Wrist Flexor Sensory Neuropathy
�Ankle Motor Neuropathy Grade
�Hip Gluteus Maximus Left Strength
�Hip Gluteus Medius Motor Neuropathy
�Hip Iliopsoas Left Strength
�Knee Quadriceps Motor Neuropathy
�Knee Quadriceps Right Strength
�Wrist Flexor Motor Neuropathy

SDY3231: Different antigenic distance metrics generate similar predictions of influenza vaccine response breadth
Status: New
Description: In this study, data from a seasonal influenza vaccine cohort were analyzed. Pre- and post-vaccination hemagglutination inhibition titers to the vaccine strains and a panel of heterologous strains data were used to calculate four different antigenic distance measures between assay strains and vaccine strains.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Andreas Handel University of Georgia University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Zane Billings University of Georgia University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
Different antigenic distance metrics generate similar predictions of influenza vaccine response breadth despite moderate correlation. medRxiv July 2025. doi: 10.1101/2025.07.01.25330674. [Pubmed: 40630575]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3233: COVID-19 vaccination enhances the immunogenicity of influenza vaccination
Status: New
Description: The study analyzed differences between individuals who received only one of the vaccines and those who received both within a three-month period. The goal was to assess whether administering both vaccines in close succession influenced immune responses, either by enhancing or interfering with the effects of each vaccine in younger and elderly populations.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Engin Berber Lerner Research Institute Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Ted Ross Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
COVID-19 Vaccination Enhances the Immunogenicity of Seasonal Influenza Vaccination in the Elderly. Vaccines (Basel) May 2025. doi: 10.3390/vaccines13050531 [Pubmed: 40432140]
Resources:
PubMed link https://pubmed.ncbi.nlm.nih.gov/40432140/]
Assays:None
Clinical Assessments:None

SDY3234: Antibody activity elicited by influenza B vaccine is influenced by pre-existing immune response
Status: New
Description: This study investigates how prior immunity to influenza B virus lineages (B/Victoria and B/Yamagata) affects the antibody responses elicited by current vaccines. Using mice models, it compares responses to lineage-specific vaccines and a broadly reactive HA antigen (B-COBRA-2), showing that immune history influences vaccine effectiveness and the activation of antibody-producing B cells.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Michael Carlock Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Ted Ross Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
Breadth of antibody activity elicited by an influenza B hemagglutinin vaccine is influenced by pre-existing immune responses to influenza B viruses. J Virol July 2025. doi: 10.1128/jvi.00705-25 [Pubmed: 40662755]
Resources:
Publication in PubMed https://pubmed.ncbi.nlm.nih.gov/40662755/]
Assays:None
Clinical Assessments:None

SDY3243: Hope in Action- Multicenter Kidney Study
Status: New
Description: This study will evaluate if receiving a kidney transplant from an HIV-infected deceased kidney donor is safe with regard to survival and major transplant-related and HIV-related complications compared to receiving a kidney from an HIV-uninfected deceased kidney donor (HIVD-).
Program/Contract:
ProgramContract
Test Program HOPE in Action: A clinical trial of HIV-to-HIV deceased donor kidney transplantation
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Christine Durand Johns Hopkins University Johns Hopkins University
Sarah Hussain Johns Hopkins University Johns Hopkins University
Publications:
Safety of Kidney Transplantation from Donors with HIV. New England Journal of Medicine None None. doi: 10.1056/NEJMoa2403733 [Pubmed: 39413376]
Resources:
ClinicalTrials.gov https://clinicaltrials.gov/study/NCT03500315?term=Hope%20in%20Action%20Kidney&rank=1]
Assays:None
Clinical Assessments:None

SDY3244: Influenza vaccination stimulates maturation of the human T follicular helper cell response
Status: New
Description: The differentiation and specificity of human CD4+ T follicular helper cells (TFH cells) after influenza vaccination have been poorly defined. Here we profiled blood and draining lymph node (LN) samples from human volunteers for over 2 years after two influenza vaccines were administered 1 year apart to define the evolution of the CD4+ TFH cell response. The first vaccination induced an increase in the frequency of circulating TFH (cTFH) and LN TFH cells at week 1 post-vaccination. This increase was transient for cTFH cells, whereas the LN TFH cells further expanded during week 2 and remained elevated in frequency for at least 3 months. We observed several distinct subsets of TFH cells in the LN, including pre-TFH cells, memory TFH cells, germinal center (GC) TFH cells and interleukin-10+ TFH cell subsets beginning at baseline and at all time points post-vaccination. The shift toward a GC TFH cell phenotype occurred with faster kinetics after the second vaccine compared to the first vaccine. We identified several influenza-specific TFH cell clonal lineages, including multiple responses targeting internal influenza virus proteins, and found that each TFH cell state was attainable within a clonal lineage. Thus, human TFH cells form a durable and dynamic multi-tissue network.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: None
Subjects: 5
Study PI, contact:
NameOrganizationSite
Paul Thomas St. Jude Children's Research Hospital St. Jude Children's Research Hospital, CIVR-HRP
Publications:
Influenza vaccination stimulates maturation of the human T follicular helper cell response. Nat Immunol August 2024. doi: 10.1038/s41590-024-01926-6 [Pubmed: 39164477]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3245: Determinants of health as predictors for differential antibody responses following SARS-CoV-2 primary and booster vaccination in an at-risk, longitudinal cohort
Status: New
Description: The authors study the effects of extrinsic and intrinsic health factors on the peak antibody response following COVID-19 primary vaccination and on the trajectory of peak antibody magnitude and durability over time.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Florian Krammer Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM-CIVIC)
Publications:
Determinants of health as predictors for differential antibody responses following SARS-CoV-2 primary and booster vaccination in an at-risk, longitudinal cohort. PLoS One April 2024. doi: 10.1371/journal.pone.0292566 [Pubmed: 38564600]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3246: Germline-encoded specificities and the predictability of the B cell response
Status: New
Description: The authors investigated whether affinity maturation might strongly select for particular amino acid motifs across diverse genetic backgrounds.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Patrick Wilson Cornell University Cornell University, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Germline-encoded specificities and the predictability of the B cell response. PLoS Pathog August 2023. doi: 10.1371/journal.ppat.1011603 [Pubmed: 37624867]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3247: Bivalent COVID-19 booster vaccines and the absence of BA.5-specific antibodies
Status: New
Description: The authors investigated whether a bivalent COVID-19 booster vaccine induced detectable BA.5-specific antibody responses in serum.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Florian Krammer Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM-CIVIC)
Publications:
Bivalent COVID-19 booster vaccines and the absence of BA.5-specific antibodies. Lancet Microbe August 2023. doi: 10.1016/S2666-5247(23)00118-0 [Pubmed: 37141905]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3248: Reduction in Long COVID Symptoms and Symptom Severity in Vaccinated Compared to Unvaccinated Adults
Status: New
Description: The investigators assess the protective effect of vaccination on long COVID in a community-based setting.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Aubree Gordon University of Michigan University of Michigan, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Reduction in Long COVID Symptoms and Symptom Severity in Vaccinated Compared to Unvaccinated Adults. Open Forum Infect Dis Feb 2024. doi: 10.1093/ofid/ofae039 [Pubmed: 38328496]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3249: Immunodominance hierarchy after seasonal influenza vaccination.
Status: New
Description: The authors investigated the immunodominance of antigenic sites in young adults and elderly after vaccination with a quadrivalent influenza vaccine (QIV) or adjuvanted trivalent influenza vaccine (ATIV), respectively.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: None
Subjects: 0
Study PI, contact:
NameOrganizationSite
Adolfo Garcia-Sastre Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM-CIVIC)
Publications:
Immunodominance hierarchy after seasonal influenza vaccination. Emerg Microbes Infect Dec 2022. doi: 10.1080/22221751.2022.2135460 [Pubmed: 36219456]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

Updated Studies

SDY1644: Urban Environmental Factors and Childhood Asthma (URECA) (ICAC-07)
Status: Updated
Description: The purpose of this study is to determine the way environmental factors (like the components of inner-city household dust) affect immune system development and symptoms of asthma in inner city children. The study is divided into three periods, as the subjects age from birth to 10 years old. Each age bracket will explore different objectives and endpoints. Study Objectives/Hypotheses: Subjects age 0 to 3 years old: Environmental factors in the inner city adversely influence the development of the immune system to promote cytokine dysregulation, allergy, and recurrent wheezing by age 3. Children who have had a viral lower respiratory infection and have developed cytokine dysregulation by age 3 are at increased risk for the development of asthma by age 6. Subjects age 4 to 7 years old: There is a unique pattern of immune development that is driven by specific urban exposures in early life, and this pattern of immune development is characterized by: 1) impairment of antiviral responses and 2) accentuation of Th2-like responses (e.g. cockroach-specific Interleukin-13(IL-13)). The clinical effects of these changes in immune development are frequent virus-induced wheezing and allergic sensitization by 3-4 years of age, and these characteristics synergistically increase the risk of asthma at age 7 years. Subjects age 7 to 10 years old: There are unique combinations of environmental exposures (cockroach allergens, indoor pollutants [Environmental Tobacco Smoke (ETS) and Nitrogen Dioxide (NO2)], lack of microbial exposure), and family characteristics (stress, genetic factors related to innate immunity) that synergistically promote asthma onset, persistence, and morbidity in urban neighborhoods. These exposures and characteristics influence immune expression and lung development during critical periods of growth, resulting in specific asthma phenotypes. Subjects age 10 to 16 years old: To determine the wheezing, asthma and atopy phenotypes in minority children growing up in poor urban neighborhoods as they develop from birth through adolescence.
Program/Contract:
ProgramContract
Inner City Asthma Consortium (ICAC) RFA-AI-13-036 INNER CITY ASTHMA CONSORTIUM 3 (ICAC3)
DOI: 10.21430/M3H1YHLR5Z
Subjects: 1218
Study PI, contact:
NameOrganizationSite
James Gern University of Wisconsin School of Medicine and Public Health University of Wisconsin School of Medicine and Public Health
Publications:
Standardization and performance evaluation of mononuclear cell cytokine secretion assays in a multicenter study.. BMC immunology Dec 2006. doi: 10.1186/1471-2172-7-29 [Pubmed: 17156490]
The Urban Environment and Childhood Asthma (URECA) birth cohort study: design, methods, and study population.. BMC pulmonary medicine May 2009. doi: 10.1186/1471-2466-9-17 [Pubmed: 19426496]
Characterization of regulatory T cells in urban newborns.. Clinical and molecular allergy : CMA Jul 2009. doi: 10.1186/1476-7961-7-8 [Pubmed: 19586545]
Parental characteristics, somatic fetal growth, and season of birth influence innate and adaptive cord blood cytokine responses.. The Journal of allergy and clinical immunology Nov 2009. doi: 10.1016/j.jaci.2009.08.021 [Pubmed: 19895995]
Prenatal maternal stress and cord blood innate and adaptive cytokine responses in an inner-city cohort.. American journal of respiratory and critical care medicine Jul 2010. doi: 10.1164/rccm.200904-0637OC [Pubmed: 20194818]
Retention strategies and predictors of attrition in an urban pediatric asthma study.. Clinical trials (London, England) Aug 2010. doi: 10.1177/1740774510373798 [Pubmed: 20571137]
Relationships among environmental exposures, cord blood cytokine responses, allergy, and wheeze at 1 year of age in an inner-city birth cohort (Urban Environment and Childhood Asthma study).. The Journal of allergy and clinical immunology Apr 2011. doi: 10.1016/j.jaci.2010.12.1122 [Pubmed: 21333343]
Umbilical cord plasma 25-hydroxyvitamin D concentration and immune function at birth: the Urban Environment and Childhood Asthma study.. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology Jun 2011. doi: 10.1111/j.1365-2222.2011.03712.x [Pubmed: 21481021]
Longitudinal relationship of early life immunomodulatory T cell phenotype and function to development of allergic sensitization in an urban cohort.. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology Mar 2012. doi: 10.1111/j.1365-2222.2011.03882.x [Pubmed: 22092655]
Antiviral IFN-g responses of monocytes at birth predict respiratory tract illness in the first year of life.. The Journal of allergy and clinical immunology May 2012. doi: 10.1016/j.jaci.2012.02.033 [Pubmed: 22460071]
Comparison of the etiology of viral respiratory illnesses in inner-city and suburban infants.. The Journal of infectious diseases Nov 2012. doi: 10.1093/infdis/jis504 [Pubmed: 23014674]
Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children.. The Journal of allergy and clinical immunology Sep 2014. doi: 10.1016/j.jaci.2014.04.018 [Pubmed: 24908147]
Influence of early-life exposures on food sensitization and food allergy in an inner-city birth cohort.. The Journal of allergy and clinical immunology Jan 2015. doi: 10.1016/j.jaci.2014.06.033 [Pubmed: 25129677]
Relation between stress and cytokine responses in inner-city mothers.. Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology Nov 2015. doi: 10.1016/j.anai.2015.07.021 [Pubmed: 26409873]
The influence of atopy and asthma on immune responses in inner-city adults.. Immunity, inflammation and disease Mar 2016. doi: 10.1002/iid3.96 [Pubmed: 27042305]
Relationships among Maternal Stress and Depression, Type 2 Responses, and Recurrent Wheezing at Age 3 Years in Low-Income Urban Families.. American journal of respiratory and critical care medicine Mar 2017. doi: 10.1164/rccm.201602-0272OC [Pubmed: 27654103]
Asthma phenotypes in inner-city children.. The Journal of allergy and clinical immunology Oct 2016. doi: 10.1016/j.jaci.2016.06.061 [Pubmed: 27720016]
Patterns of immune development in urban preschoolers with recurrent wheeze and/or atopy.. The Journal of allergy and clinical immunology Sep 2017. doi: 10.1016/j.jaci.2016.10.052 [Pubmed: 28089873]
Early-life home environment and risk of asthma among inner-city children.. The Journal of allergy and clinical immunology Apr 2018. doi: 10.1016/j.jaci.2017.06.040 [Pubmed: 28939248]
Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment.. Journal of immunology (Baltimore, Md. : 1950) Mar 2018. doi: 10.4049/jimmunol.1701525 [Pubmed: 29431692]
Spirometry and Impulse Oscillometry in Preschool Children: Acceptability and Relationship to Maternal Smoking in Pregnancy.. The journal of allergy and clinical immunology. In practice Sep 2018. doi: 10.1016/j.jaip.2017.12.028 [Pubmed: 29449165]
Allergen-induced activation of natural killer cells represents an early-life immune response in the development of allergic asthma.. The Journal of allergy and clinical immunology Dec 2018. doi: 10.1016/j.jaci.2018.02.019 [Pubmed: 29518416]
Longitudinal Phenotypes of Respiratory Health in a High-Risk Urban Birth Cohort.. American journal of respiratory and critical care medicine Jan 2019. doi: 10.1164/rccm.201801-0190OC [Pubmed: 30079758]
Longitudinal data reveal strong genetic and weak non-genetic components of ethnicity-dependent blood DNA methylation levels.. Epigenetics Jun 2021. doi: 10.1080/15592294.2020.1817290 [Pubmed: 32997571]
Endotype of allergic asthma with airway obstruction in urban children.. The Journal of allergy and clinical immunology Nov 2021. doi: 10.1016/j.jaci.2021.02.040 [Pubmed: 33713771]
Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.. Genome medicine May 2022. doi: 10.1186/s13073-022-01058-2 [Pubmed: 35606880]
Multi-omic association study identifies DNA methylation-mediated genotype and smoking exposure effects on lung function in children living in urban settings.. PLoS genetics Jan 2023. doi: 10.1371/journal.pgen.1010594 [Pubmed: 36638096]
Resources:
ClinicalTrials.gov https://clinicaltrials.gov/ct2/show/NCT00114881]
SRA SRP102104 https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP102104]
GEO GSE96783 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE96783]
BioProject https://www.ncbi.nlm.nih.gov/bioproject/PRJNA379624]
SRA SRP249918 https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP249918]
GEO GSE145505 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145505]
BioProject https://www.ncbi.nlm.nih.gov/bioproject/PRJNA607333]
dbGaP https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs002921.v2.p1]
GEO GSE132181 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132181]
BioProject https://www.ncbi.nlm.nih.gov/bioproject/PRJNA546267]
Related study - SDY1025 https://www.immport.org/shared/search?text=sdy1025]
Assays:
Assay TypeNumber of Exp. Samples
DNA methylation profiling assay 392
RNA sequencing 866
Clinical Assessments:
asthma primary definition
Baby Birth Record
Child Bedroom Environment
Daycare Environment
Heating and Appliances in Home
Home dust allergen levels and assays
Home Environmental Issues
Home Smoking Environment
Maternal Alcohol Use History
Maternal Smoking History
Medical Record During Labor and Delivery
Medical Record During Pregnancy
Other Residence Environment
Overall Animal Exposure
Spirometry
Spirometry Reversibility
Vital Signs